Hoechst stain

Hoechst stains are part of a family of blue fluorescent dyes used to stain DNA.^[1][2] These Bis-benzimides were originally developed by the Hoechst AG, which numbered all their compounds so that the dye Hoechst 33342 is the 33342nd compound made by the company. There are three related Hoechst stains: Hoechst 33258, Hoechst 33342, and Hoechst 34580. The dyes Hoechst 33258 and Hoechst 33342 are the ones most commonly used and they have similar excitation/emission spectra.

Contents 1 Molecular characteristics 2 Applications 3 Toxicity and safety 4 See also 5 External links 6 References

Molecular characteristics

Both dyes are excited by ultraviolet light at around 350 nm, and both emit blue/cyan fluorescent light around an emission maximum at 461 nm. Unbound dye has its maximum fluorescence emission in the 510-540 nm range. Hoechst stains can be excited with a xenon- or mercury-arc lamp or with an ultraviolet laser. There is a considerable Stokes shift between the excitation and emission spectra that makes Hoechst dyes useful in experiments in which multiple fluorophores are used. The fluorescence intensity of Hoechst dyes also increases with the pH of the solvent.^[3]

Hoechst dyes are soluble in water and in organic solvents such as dimethyl formamide or dimethyl sulfoxide. Concentrations can be achieved of up to 10 mg/mL. Aqueous solutions are stable at 2-6 °C for at least six months when protected from light. For long-term storage the solutions are instead frozen at ≤-20 °C.^[3]

The dyes bind to the minor groove of double-stranded DNA with a preference for sequences rich in adenine and thymidine. Although the dyes can bind to all nucleic acids, AT-rich double-stranded DNA strands enhance fluorescence considerably.^[4] Hoechst dyes are cell-permeable and can bind to DNA in live or fixed cells. Therefore, these stains are often called supravital, which means that cells survive a treatment with these compounds. Cells that express specific ATP-binding cassette transporter proteins can also actively transport these stains out of their cytoplasm.

Applications

A concentration of 0.1-12 µg/ml is commonly used to stain DNA in bacteria or eukaryotic cells. Cells are stained for 1-30 min at room temperature or 37 °C and then washed to remove unbound dye. A green fluorescence of unbound Hoechst dye may be observed on samples which were stained with too much dye or which were not washed thoroughly.^[3] Hoechst dyes are often used as substitutes for another nucleic acid stain called DAPI.

Key differences between Hoechst dyes and DAPI are:

• Hoechst dyes are less toxic than DAPI, which ensures a higher viability of stained cells^[5]
• The additional ethyl group of the Hoechst dyes renders them more cell-permeable.

Hoechst 33342 and 33258 are quenched by Bromodeoxyuridine (BrdU), which is commonly used to detect dividing cells. Cells can integrate BrdU in newly synthesized DNA as a substitute for thymidine. When BrdU is integrated into DNA, it is supposed that the bromine deforms the minor groove so that Hoechst dyes cannot reach their optimal binding site. Binding of Hoechst dyes is even stronger to BrdU-substituted DNA; however, no fluorescence ensues. Hoechst dyes can be used together with BrdU to monitor cell cycle progression.^[6][7]

Hoechst dyes are commonly used to stain genomic DNA in the following applications:

• Flourescence microscopy and immunohistochemistry, often together with other fluorophores^[8]
• Flow cytometry to count or sort out cells. An example is the use of Hoechst dyes to analyse how many cells of a population are in which phase of the cell cycle^[9]
• Detection of DNA in the presence of RNA in agarose gels^[10]
• Automated DNA determination^[11]
• Chromosome sorting.^[10]

Toxicity and safety

Because Hoechst stains bind to DNA, they interfere with DNA replication during cell division. Consequently, they are potentially mutagenic and carcinogenic, so care should be taken in their handling and disposal. Hoechst stain is used to sort sperm in livestock and humans. Its safety has been debated.^[12][13]

See also

External links

• Spectral traces for fluorescent dyes
• Manual for Hoechst stains
• An online guide to fluorescent probes and commercial labeling technologies

References